The value of ancient Mexican manuscripts in the study of the general development of writing, Washington : Government printing office, 1912
Chichen Itza and its Cenote of Sacrifice : a comparative study of contemporaneous Maya and Toltec, Cambridge : Peabody Museum, 1957
Time and american archaeologys, New York : American museum of natural history, 1927
Some notes on the Maya pronoun, New York, 1906
Anthropological papers written in honor of Franz Boas, presented to him on the twenty-fifth anniversary of his doctorate, New York : G.E. Stechert & Co., 1906
A Maya grammar, : with bibliography and appraisement of the works noted, New York : Dover publications, 1977
Excavation of a site at Santiago Ahuitzotla, D. F. Mexico, Washington : Government Printing Office, 1921
A comparative study of the Mayas and the Lacandones , New York : AMS Press, 1978
Avec Glover M. Allen, Animal figures in the Maya codices, Cambridge, Mass. : The Museum, 1910
Mayas y Lacandones: un estudio comparativo, México : Instituto Nacional Indigenista, 1982
Leslie C. Dunn (based upon data collected by Alfred M. Tozzer), An anthropometric study of Hawaiians of pure and mixed blood, Cambridge (Mass.) : The Museum, 1928
Teobert Maler (Preliminary study of the ruins of Tikal, Guatemala by Alfred M. Tozzer), Explorations in the department of Peten, Guatemala, Tikal, Millwood, N.Y. : Kraus Reprint, 1976, c1911
A Maya grammar with bibliography and appraisement of the works noted by Alfred M. Tozzer, Cambridge, Mass. : Published by the Museum, 1921